Scientific Annotations
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Prof. Dr. Beat Signer
Vrije Universiteit Brussel
Department of Computer Science
Pleinlaan 2, 1050 Brussels
(Belgium)
+32 2 629 1239, bsigner@vub.be
Office: PL9.3.60 (Pleinlaan 9)
VUB
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Scientific Annotations

The publication annotation application was designed in the Global Information Systems (GlobIS) research group at ETH Zurich to support researchers in their annotations, recommendations and cross-referencing of articles. The application domain chosen for this demonstrator was the Paper++ project database providing information about related technologies, publications and contact persons. Some of the publications stored in the database were augmented in the printed version with links directly into the database. The prototype of the publication annotation application was another early application that used barcode technology to simulate interaction with digital pens. A publication augmented with digital information from the database is shown in Fig. 1. After selecting the highlighted word 'Pocket PC', a user immediately gets detailed information displayed in a web page about the Pocket PC concept introduced in this part of the document together with links to various relevant websites and also lists of partners and publications based on this technology as illustrated in the figure below.
Annotated research papers
Fig. 1: Annotated research papers
What is the domain of discourse of such a publication annotation application? There are two possible answers — the specific research domain, e.g. interactive paper, or the general research activity of literature search and survey. Clearly, the former is much more specific and a system to support it requires a database about interactive paper representing domain-specific concepts such as digital pens and position encodings. The second is much more general and only requires a database that knows about concepts such as citations, references, annotations etc. which enables linking between different articles and information about the authors of those articles. While the data for this prototype is based on the interactive paper domain, the application’s information model is a very general one representing concepts such as articles, authors and technologies. This means that the prototype is not limited to be used in a specific application domain such as the Paper++ project, but could be used by any scientific research community.
Result page with metadata
Fig. 2: Result page with metadata
For the publication annotation application, we made use of XIMA's capability to support multi-modal user interfaces. The simplest form of using the annotation application for digitally augmenting paper documents is to enable links from active regions to specific URLs. On link activation, a browser is started to visualise the appropriate information. Through this simple mechanism, it becomes possible to have active citations. A user no longer has to go to a library or even to turn to the bibliography at the end of the paper. Instead, by just pointing to a printed citation, they get direct access to the digital version of the cited paper which, if necessary, can then also be printed.

An activated link may lead to a simple resource, for example a PDF version for a citation that has been selected. However, if a link has been defined to an object of the domain-specific application database, rather than just to a simple web resource, additional information can be accessed. In addition to the title and list of authors for the cited paper, through a dynamically generated web page one gets information about technologies that have been used in the cited paper, other papers where the same technologies have been used etc.

One problem of such a system for handling scientific annotations is that while reading a paper, a user always has to switch to the computer screen to view supplementary information. We therefore decided to design a multi-modal user interface by taking advantage of XIMA's power to generate voice output. In addition to returning the information about a citation’s title and other related information in textual form, XIMA transforms this data to spoken output using text-to-speech (TTS) technology. This has the advantage that a user can access multiple channels at the same time for gathering information. After selecting an active area on a research paper, the user can go on reading while simultaneously listening to the voice information about the linked resource.

Even without adding any additional digital information and using the digital media solely for defining associations between research papers, the sharing of these links is a potent tool that somehow extends the very static concept of today’s citations as used in research papers. In this way, new citations and links to related work can be added to a research paper after it has already been published. If a user later activates such an annotation, they either get access to digital versions of the associated documents or at least get information about the title, the authors and the publisher of an associated document. Note that by using the selector concept, it is not only possible to define entire documents as links targets but also to reference specific parts of a document. The activation of such a paper-to-paper link not only returns the title of a document which has been defined as a link target but also details about the page number and where on that page the relevant information can be found. Further, by using a single iServer database for multiple clients or applying the distributed iServer architecture, it becomes possible to collaboratively build up a literature database together with experts in the same or other research domains.

We have introduced the publication annotation application as a tool for augmenting research papers and building associations between them. However, the application domain is not limited to research papers only and can be used to build up a knowledge base for any application domain based on paper documents and digital information. By applying the distributed iServer approach, not only experts of the same research area can share their knowledge, but also different research domains can be cross-linked forming a global information space.

Related Publications

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